{
  "_id": "6ac4a9d5f511ae58c099fa7a",
  "Package": "LipidomicsR",
  "Type": "Package",
  "Title": "Elegant Tools for Processing and Visualization of Lipidomics\nData",
  "Version": "0.3.6",
  "Authors@R": "c(person(given = \"Mingshi\", family = \"Li\", email = \"mingshi.21@intl.zju.edu.cn\", role = \"aut\"),\nperson(given = \"Hengyu\", family = \"Zhu\", email = \"hengyu.21@intl.zju.edu.cn\", role = c(\"aut\", \"cre\")))",
  "Maintainer": "Hengyu Zhu <hengyu.21@intl.zju.edu.cn>",
  "Description": "An elegant tool for processing and visualizing lipidomics\ndata generated by mass spectrometry. 'LipidomicsR' simplifies\nchannel and replicate handling while providing thorough lipid\nspecies annotation. Its visualization capabilities encompass\nprincipal components analysis plots, heatmaps, volcano plots,\nand radar plots, enabling concise data summarization and\nquality assessment. Additionally, it can generate bar plots and\nline plots to visualize the abundance of each lipid species.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-05 09:48:15 UTC",
    "User": "root"
  },
  "Author": "Mingshi Li [aut, com], Hengyu Zhu [aut, cre]",
  "URL": "https://github.com/mingshi1/LipidomicsR",
  "BugReports": "http://github.com/mingshi1/LipidomicsR/issues",
  "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev\nlibxml2-dev libssl-dev libx11-dev zlib1g-dev",
  "Repository": "https://mingshi1.r-universe.dev",
  "Date/Publication": "2024-04-21 16:36:05 UTC",
  "RemoteUrl": "https://github.com/mingshi1/lipidomicsr",
  "RemoteRef": "HEAD",
  "RemoteSha": "8efb7db17d615416fc80f02e5bc65d69f905c053",
  "_user": "mingshi1",
  "_type": "src",
  "_file": "LipidomicsR_0.3.6.tar.gz",
  "_fileid": "https://r2.ropensci.org/a2b91d79eb138a74654dbeecec0b2a8d2f732f58332b5c7ae92af394b7a71c01",
  "_filesize": 183954,
  "_sha256": "a2b91d79eb138a74654dbeecec0b2a8d2f732f58332b5c7ae92af394b7a71c01",
  "_expires": "2027-01-13T09:52:37.000Z",
  "_created": "2026-10-05T09:48:15.000Z",
  "_published": "2026-10-06T07:57:09.344Z",
  "_jobs": [
    {
      "job": 112165236726,
      "time": 193,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11336438722"
    },
    {
      "job": 112165237406,
      "time": 187,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11336933288"
    },
    {
      "job": 112165237277,
      "time": 207,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11337307382"
    },
    {
      "job": 112165235322,
      "time": 270,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11397243756"
    },
    {
      "job": 112165235670,
      "time": 281,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11337346529"
    },
    {
      "job": 112165236340,
      "time": 158,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11337112780"
    },
    {
      "job": 112165236354,
      "time": 127,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11336928257"
    },
    {
      "job": 112165236663,
      "time": 178,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11337008131"
    },
    {
      "job": 112165236649,
      "time": 123,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11336463395"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468",
  "_status": "success",
  "_upstream": "https://github.com/mingshi1/lipidomicsr",
  "_commit": {
    "id": "8efb7db17d615416fc80f02e5bc65d69f905c053",
    "author": "mingshi1 <mingshi.21@intl.zju.edu.cn>",
    "committer": "mingshi1 <mingshi.21@intl.zju.edu.cn>",
    "message": "update for yelab\n",
    "time": 1713717365
  },
  "_maintainer": {
    "name": "Hengyu Zhu",
    "email": "hengyu.21@intl.zju.edu.cn",
    "login": "zhuhengyudashuaibi",
    "description": "",
    "uuid": 101091287
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "tidyverse",
      "role": "Depends"
    },
    {
      "package": "broom",
      "role": "Imports"
    },
    {
      "package": "car",
      "role": "Imports"
    },
    {
      "package": "ggiraph",
      "role": "Imports"
    },
    {
      "package": "rcompanion",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "cowplot",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fmsb",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggplotify",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "pheatmap",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "ggforce",
      "role": "Imports"
    },
    {
      "package": "ggsci",
      "role": "Imports"
    }
  ],
  "_owner": "mingshi1",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "mingshi1",
      "count": 7,
      "uuid": 101240207
    }
  ],
  "_userbio": {
    "uuid": 101240207,
    "type": "user",
    "name": "mingshi Li",
    "followers": 1
  },
  "_downloads": {
    "count": 334,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/LipidomicsR"
  },
  "_devurl": "https://github.com/mingshi1/lipidomicsr",
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/LipidomicsR.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/mingshi1/lipidomicsr",
  "_realowner": "mingshi1",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2024-03-14"
    },
    {
      "version": "0.1.6",
      "date": "2024-03-17"
    },
    {
      "version": "0.3.6",
      "date": "2024-04-22"
    }
  ],
  "_exports": [
    "abundance.lineplot",
    "abundance.plot",
    "abundance.signif",
    "abundance.summary",
    "channel.delete",
    "delRep",
    "FC_P",
    "groupXpert",
    "heatmap",
    "importer",
    "noridx",
    "normalization_calculator",
    "plotRadar",
    "QCplot",
    "replicate.delete",
    "rsd_calculator",
    "sepclass",
    "total.abundance",
    "volcano"
  ],
  "_help": [
    {
      "page": "absolute.calculator",
      "title": "absolute.calculator()",
      "topics": [
        "absolute.calculator"
      ]
    },
    {
      "page": "abundance.lineplot",
      "title": "Plot Abundance Data",
      "topics": [
        "abundance.lineplot"
      ]
    },
    {
      "page": "abundance.plot",
      "title": "Plot Abundance Data",
      "topics": [
        "abundance.plot"
      ]
    },
    {
      "page": "abundance.signif",
      "title": "Analyze Abundance Significance",
      "topics": [
        "abundance.signif"
      ]
    },
    {
      "page": "abundance.summary",
      "title": "Summarize Abundance Data",
      "topics": [
        "abundance.summary"
      ]
    },
    {
      "page": "channel.delete",
      "title": "Delete repeated channel data generated by LC-MS",
      "topics": [
        "channel.delete"
      ]
    },
    {
      "page": "delRep",
      "title": "delRep()",
      "topics": [
        "delRep"
      ]
    },
    {
      "page": "FC_P",
      "title": "Calculate Fold Change and p-values for differential expression analysis",
      "topics": [
        "FC_P"
      ]
    },
    {
      "page": "groupXpert",
      "title": "groupXpert()",
      "topics": [
        "groupXpert"
      ]
    },
    {
      "page": "heatmap",
      "title": "heatmap()",
      "topics": [
        "heatmap"
      ]
    },
    {
      "page": "importer",
      "title": "importer()",
      "topics": [
        "importer"
      ]
    },
    {
      "page": "lEa",
      "title": "lEa()",
      "topics": [
        "lEa"
      ]
    },
    {
      "page": "lEr",
      "title": "lEr",
      "topics": [
        "lEr"
      ]
    },
    {
      "page": "lipidomicsR_env",
      "title": "Global environment settings of LipidomicsR",
      "topics": [
        "lipidomicsR_env"
      ]
    },
    {
      "page": "nor.absolute",
      "title": "nor.absolute()",
      "topics": [
        "nor.absolute"
      ]
    },
    {
      "page": "nor.relative",
      "title": "nor.relative()",
      "topics": [
        "nor.relative"
      ]
    },
    {
      "page": "noridx",
      "title": "noridx()",
      "topics": [
        "noridx"
      ]
    },
    {
      "page": "normalization_calculator",
      "title": "normalization_calculator()",
      "topics": [
        "normalization_calculator"
      ]
    },
    {
      "page": "percent.calculator",
      "title": "percent.calculator()",
      "topics": [
        "percent.calculator"
      ]
    },
    {
      "page": "plotRadar",
      "title": "plotRadar()",
      "topics": [
        "plotRadar"
      ]
    },
    {
      "page": "QCplot",
      "title": "QCplot()",
      "topics": [
        "QCplot"
      ]
    },
    {
      "page": "relative_calculator",
      "title": "relative.calculator()",
      "topics": [
        "relative_calculator"
      ]
    },
    {
      "page": "replicate.delete",
      "title": "Delete repeated channel data generated by LC-MS",
      "topics": [
        "replicate.delete"
      ]
    },
    {
      "page": "rsd_calculator",
      "title": "Calculate Relative Standard Deviation (RSD)",
      "topics": [
        "rsd_calculator"
      ]
    },
    {
      "page": "sepclass",
      "title": "sepclass()",
      "topics": [
        "sepclass"
      ]
    },
    {
      "page": "toGroup.calculator",
      "title": "toGroup.calculator()",
      "topics": [
        "toGroup.calculator"
      ]
    },
    {
      "page": "total.abundance",
      "title": "Calculate Total Abundance Data",
      "topics": [
        "total.abundance"
      ]
    },
    {
      "page": "volcano",
      "title": "Generate Volcano Plot",
      "topics": [
        "volcano"
      ]
    }
  ],
  "_readme": "https://github.com/mingshi1/lipidomicsr/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "askpass",
    "backports",
    "base64enc",
    "bit",
    "bit64",
    "blob",
    "boot",
    "broom",
    "bslib",
    "cachem",
    "callr",
    "car",
    "carData",
    "cellranger",
    "class",
    "cli",
    "clipr",
    "codetools",
    "coin",
    "colorspace",
    "conflicted",
    "cowplot",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "Deriv",
    "DescTools",
    "digest",
    "doBy",
    "dplyr",
    "dtplyr",
    "e1071",
    "evaluate",
    "Exact",
    "expm",
    "farver",
    "fastmap",
    "fmsb",
    "fontawesome",
    "fontBitstreamVera",
    "fontLiberation",
    "fontquiver",
    "forcats",
    "forecast",
    "Formula",
    "fracdiff",
    "fs",
    "gargle",
    "gdtools",
    "generics",
    "ggforce",
    "ggiraph",
    "ggplot2",
    "ggplotify",
    "ggrepel",
    "ggsci",
    "gld",
    "glue",
    "googledrive",
    "googlesheets4",
    "gridGraphics",
    "gtable",
    "haven",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httr",
    "ids",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lattice",
    "libcoin",
    "lifecycle",
    "lme4",
    "lmom",
    "lmtest",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "matrixStats",
    "memoise",
    "mgcv",
    "mime",
    "minqa",
    "modelr",
    "modeltools",
    "multcomp",
    "multcompView",
    "mvtnorm",
    "nlme",
    "nloptr",
    "nnet",
    "nortest",
    "numDeriv",
    "openssl",
    "otel",
    "pbkrtest",
    "pheatmap",
    "pillar",
    "pkgconfig",
    "plyr",
    "polyclip",
    "prettyunits",
    "processx",
    "progress",
    "proxy",
    "ps",
    "purrr",
    "quantreg",
    "R6",
    "ragg",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "rcompanion",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "readr",
    "readxl",
    "reformulas",
    "rematch",
    "rematch2",
    "reprex",
    "reshape2",
    "rlang",
    "rmarkdown",
    "rootSolve",
    "rstudioapi",
    "rvest",
    "S7",
    "sandwich",
    "sass",
    "scales",
    "selectr",
    "SparseM",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "systemfonts",
    "textshaping",
    "TH.data",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidyverse",
    "timechange",
    "timeDate",
    "tinytex",
    "tweenr",
    "tzdb",
    "urca",
    "utf8",
    "uuid",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "xfun",
    "xml2",
    "yaml",
    "yulab.utils",
    "zoo"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "lipidomicsr",
  "_universes": [
    "mingshi1",
    "zhuhengyudashuaibi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.6",
      "date": "2026-10-05T09:50:59.000Z",
      "distro": "resolute",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/2bb5cd4709f36ef5ba5b0b9e25a974d908c9bab4d58119e021663692d648cbe2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.3.6",
      "date": "2026-10-05T09:51:03.000Z",
      "distro": "resolute",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/22cd5a3a216053dbdd155b7ba68e8b8c3838eb0daf82ee21daac2e42097e18f4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.6",
      "date": "2026-10-05T09:51:00.000Z",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/09d3011c92e7ffa2600ebf615860a7280d75f85e28bd828768cc93bcd1e55dad",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.3.6",
      "date": "2026-10-06T07:54:59.000Z",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/d847e47a2091ec12c63387035a404fb893b5299cfcb0bcb802ff921fb185e412",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.6",
      "date": "2026-10-05T09:51:18.000Z",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/2b95fe48418fb18cb73f55a436523909b408ade2b3e5067011abfab99034dc99",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.6",
      "date": "2026-10-05T09:49:37.000Z",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/e0378bde025406f1422a62c030ac428e69e31ee51d77bfaaaffb3c213376e710",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.6",
      "date": "2026-10-05T09:50:33.000Z",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/7ba9f9d334ad7551884422539f5ced75601f7a7a4eecb0b0679cc9bc12ed4537",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.3.6",
      "date": "2026-10-05T09:49:37.000Z",
      "commit": "8efb7db17d615416fc80f02e5bc65d69f905c053",
      "fileid": "https://r2.ropensci.org/356030cd0b1d11c792c1355e94b914fcbb1037921f28521af7ac382ee273b665",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mingshi1/actions/runs/37291946468"
    }
  ]
}