Package: LipidomicsR 0.3.6

Hengyu Zhu

LipidomicsR: Elegant Tools for Processing and Visualization of Lipidomics Data

An elegant tool for processing and visualizing lipidomics data generated by mass spectrometry. 'LipidomicsR' simplifies channel and replicate handling while providing thorough lipid species annotation. Its visualization capabilities encompass principal components analysis plots, heatmaps, volcano plots, and radar plots, enabling concise data summarization and quality assessment. Additionally, it can generate bar plots and line plots to visualize the abundance of each lipid species.

Authors:Mingshi Li [aut, com], Hengyu Zhu [aut, cre]

LipidomicsR_0.3.6.tar.gz
LipidomicsR_0.3.6.zip(r-4.7-any)LipidomicsR_0.3.6.zip(r-4.6-any)LipidomicsR_0.3.6.zip(r-4.5-any)
LipidomicsR_0.3.6.tgz(r-4.6-any)LipidomicsR_0.3.6.tgz(r-4.5-any)
LipidomicsR_0.3.6.tar.gz(r-4.7-any)LipidomicsR_0.3.6.tar.gz(r-4.6-any)
LipidomicsR_0.3.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
LipidomicsR/json (API)

# Install 'LipidomicsR' in R:
install.packages('LipidomicsR', repos = c('https://mingshi1.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mingshi1/lipidomicsr/issues

On CRAN:

Conda:

3.00 score 2 stars 1 scripts 334 downloads 19 exports 175 dependencies

Last updated from:8efb7db17d. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE193
source / vignettesOK281
linux-releaseNOTE187
macos-releaseNOTE270
macos-oldrelNOTE207
windows-develNOTE127
windows-releaseNOTE123
windows-oldrelNOTE178
wasm-releaseOK158

Exports:abundance.lineplotabundance.plotabundance.signifabundance.summarychannel.deletedelRepFC_PgroupXpertheatmapimporternoridxnormalization_calculatorplotRadarQCplotreplicate.deletersd_calculatorsepclasstotal.abundancevolcano

Dependencies:abindaskpassbackportsbase64encbitbit64blobbootbroombslibcachemcallrcarcarDatacellrangerclassclicliprcodetoolscoincolorspaceconflictedcowplotcpp11crayoncurldata.tableDBIdbplyrDerivDescToolsdigestdoBydplyrdtplyre1071evaluateExactexpmfarverfastmapfmsbfontawesomefontBitstreamVerafontLiberationfontquiverforcatsforecastFormulafracdifffsgarglegdtoolsgenericsggforceggiraphggplot2ggplotifyggrepelggscigldgluegoogledrivegooglesheets4gridGraphicsgtablehavenhighrhmshtmltoolshtmlwidgetshttridsisobandjquerylibjsonliteknitrlabelinglatticelibcoinlifecyclelme4lmomlmtestlubridatemagrittrMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmimeminqamodelrmodeltoolsmultcompmultcompViewmvtnormnlmenloptrnnetnortestnumDerivopensslotelpbkrtestpheatmappillarpkgconfigplyrpolyclipprettyunitsprocessxprogressproxypspurrrquantregR6raggrappdirsrbibutilsRColorBrewerrcompanionRcppRcppArmadilloRcppEigenRdpackreadrreadxlreformulasrematchrematch2reprexreshape2rlangrmarkdownrootSolverstudioapirvestS7sandwichsassscalesselectrSparseMstringistringrsurvivalsyssystemfontstextshapingTH.datatibbletidyrtidyselecttidyversetimechangetimeDatetinytextweenrtzdburcautf8uuidvctrsviridisLitevroomwithrxfunxml2yamlyulab.utilszoo